Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10004836 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14942 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026251 | Metagenome / Metatranscriptome | 198 | N |
F079980 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315907_1000483611 | F079980 | N/A | MTELVYVTNHTDKDLYAEYNYVGYDFPVGKTVELTVPAARHMLGYGDEDKEKYLVQLGLIRLHSELEEATEKFRNIQISEEPPKKNSSLPSAVGVVPLRLEKAVGGKSNQRVA |
Ga0315907_100048369 | F026251 | AGGAG | MALAMNKIILANATTNTAGAYFANVTLTAANAGTVIPAGTYMVFPAANVIVTANNGSSITTLLANNTGGMILSDGVNVFAQSTIAGAGSATALTINGGISANSTYTS |
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