Scaffold Ga0315907_10004797

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10004797
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15025
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F017989	Metagenome	237	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F042335	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000479714	F042335	N/A	MNDNTTTHGIFGTVISTTGFIVSMLPEIEASIRIGGGVISIIAGILTCIYMTKQIIKK
Ga0315907_1000479715	F011668	N/A	MNAKQIVLAMIVISFIFLGMAFLTGCAGFKNPSVCFKTDYGTFCYELPEIKGLKK
Ga0315907_100047973	F040160	N/A	MGGLGSVTTTTTMTTEKVKSLCAAITAHEDWNKLQAYLLLNVTPPEGVTTLIHAIKTIDAIGTEEQGAFKKAKSSPRNKETKDSSIDPDLDEN
Ga0315907_100047976	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCSPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTEDGTYCGLVDDGAWFVPEHTINNEAGYDLCAIRVKIAPADLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWAKLVRVPRYVKVVLEQGCAYVPNRAYRTADFGISVAMVNKAMCKWTMPSSSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRLPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS
Ga0315907_100047978	F027487	N/A	MACFTSLPYHNKFYPLLITVSAAAGITPISFGCFDAASDASRLYQFYLAFATIGGLTPVSENCFVQKTEDQQLFVLNEAVAAALIVT
Ga0315907_100047979	F017989	N/A	MATPALSQPCFVDLTPDQQNFNIYESIKQIAGFDIPAYDQIDITYYGSTNNIATVQYLNAGDVVATLTLTYAVQPPTTNDANLTGVTVAYP