Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10004115 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10004115 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16550
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16550

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F009531	Metagenome / Metatranscriptome	316	Y
F011487	Metagenome / Metatranscriptome	290	Y
F014250	Metagenome / Metatranscriptome	264	Y
F024314	Metagenome / Metatranscriptome	206	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100041151	F024314	N/A	MDSDQQQLTPEQAQTILLFQIEQKLRFVIAKQVENKFHGMYHNASHDIAQFIRNMA
Ga0315907_1000411512	F006385	GGCGG	MILDNGTLIAIVIALTGSLTVMGLFWKQNIQQQKEIRRLQVALRTERLKK
Ga0315907_1000411522	F011487	GGAG	MTYENDEMLDEYYATTCPECKENSVDAYEEKCTHCLLEDMSAHYNEDIALEMSLGLDY
Ga0315907_100041153	F084234	AGGAG	MLDFFTTPFEWFANVVQYSLIFMAIMMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVVRDLGITSIDLKQAKDTQKMKTYLDRKVVPILSKIS
Ga0315907_1000411531	F009531	N/A	MTLKVEIYEMNYACSPGGVDCWEATIHNYGNSSTATDFKTAGEAVNWLLDRYPTQVLELTVTSLPAYEKEYV
Ga0315907_1000411536	F014250	GAGG	MITTHLEPRLQKLVDLGESGTDILHGELKNLMYEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFAINDRTKKNG
Ga0315907_100041154	F095473	GAG	MNTMTCQVINCESTELVYSGTDAFMLGINTETYCYKCANAYAQIDRVMSKVRQDYLDSLTPVSTLTTSD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10004115

Overview

Ecosystem & Geography

Associated Families

Sequences