Scaffold Ga0315907_10004013

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10004013
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16802
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031036	Metagenome / Metatranscriptome	183	N
F068607	Metagenome	124	N
F100734	Metagenome	102	N
F102866	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000401311	F100734	N/A	MKTATIQHATGDGTWESAYGLMYSYELHLSNGEHIKVNAKKANAFASGQQINYELTGKTDKNQTPLAKIVSDFNQRPQGGGYTPQAPANNAGGKDRSILIQVAFKMAMDRVNADPTMKLTEVYELAKFMYDQMKQAHEQF
Ga0315907_1000401319	F031036	N/A	MNAAQFITIFTGGNYAAPIWDAYEAYVLADSGTIEAEVCTTNAIANLL
Ga0315907_1000401324	F068607	N/A	VNYLQYIYDAVNASTIVPVYSYAAPQGVAEDFIVIQLGGIEVSETKDEYKAERVSATLFMHFASADTAQAQLSQIRHNLQHYPRVMPLYEQYVMSDLGTLEGEDCAAEQMGVAAQTTFTLAYMTGAQFFYNEDDETVILAADFTFLINY
Ga0315907_100040135	F102866	AGG	MRNLRKELEQVEAEMAELRHQAELLERLALYITRSKHHANTFYWAKHLEREKLIWELGDDFDPLTWETNFNIWKR