Scaffold Ga0315907_10003793

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10003793
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17464
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (29.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020882	Metagenome / Metatranscriptome	221	Y
F021983	Metagenome / Metatranscriptome	216	Y
F084133	Metagenome / Metatranscriptome	112	Y
F087174	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000379315	F087174	N/A	MSYYIKDTTINKVLTFTDPNEVVSYLENLCRKQLKKTRKEMMFEMESLGHGYDDPQGVNFTTMMGEYFEVGALKKDGRMVRTNIHELARNLKYRKEMGD
Ga0315907_1000379322	F084133	AGGA	MFNNKIDGMNQTPTLNFGLKDTKPVQCTDCKGEVFQNGVLFRKVSKILAGTDKDALVPITIPYCVNCMAPLDELLPPELKQPKFSLEQ
Ga0315907_1000379323	F021983	N/A	MEEWPTVGMGNLQAMMVIRQQNAPVPASNGFDPYQAMLRRKQSNIQDETGYINTPVQEYDPKDIQELEEFCTKYGIVGFNFGTMNPKSALRMLKGRMGVREEKVTPKTMLFG
Ga0315907_1000379327	F020882	N/A	DRMMQGLPYNQGGAVSGASDVSTFTSPDVSQDPSNFGTLTDKSKITATDQESMQVIAPFGPYTGQNPKDYAGDVQQIKYKVTPDEVLAGIDYEMKKLVLKDKQVAKQNVVNNLKKDPQYYSKLHMLDIQDGDEITKPEDYRTPQEKAIAEIMRDLHEKKKQRRNWS