NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10003642

Scaffold Ga0315907_10003642


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10003642 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17963
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000364210F001055N/AMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDSAATQTLPKAIVLCESARAPADLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFTASTDASCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA
Ga0315907_1000364223F001923N/AVSPSPPINPEDIPKELKDGVVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVGAVTAKLKPHGKGKASKAKRKR
Ga0315907_1000364224F003583N/AMGKAKPAKQSGSGNLLLAVTLLTAFAGVSAFSSAYIAGYVLDQLQSTDALVMIVTDSGLKSDSADLERNMSTATLALRSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0315907_1000364225F014261N/AMKTLIALSVLAILGWTAVVTFCGPELYRVINGPEPVKAKVVRRHR
Ga0315907_100036428F001298N/AMSLYSEFLADAKEMIADFGVAGSANSGAITFKCLISDPAVATVLEAGGYMERTQYSVRLPAVTASWSLPDGSIGASAAIISSGAPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ
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