Scaffold Ga0315907_10002965

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002965
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20612
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024536	Metagenome / Metatranscriptome	205	N
F029344	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000296514	F024536	AGG	MRFFIVFISMALLHQTSAQAYMRKKQNIGFYTGGTFKDAQFNTASMGLTRSVFNYFEPEIGLRATLPLVAPADNSQMHHVYLTTGLNLRKSLFPINQRKKGRSCRGEIIEIFAAPEYNYLIKSNTDRYDRGQFSVRTGLGIFHYQTGFSKRSKAWNVKAQVYFRYVPGPITNTMSMKNEFGIQLRVFKFKTYDFVK
Ga0315907_1000296517	F029344	N/A	MKKLILFSVFSLVTWINLDAQVYAVAASKDVFASQKASGVITFQFGADVLPETVLTQGENFTENFTTAFDAVSYVGTFTMKENVEMNRLMLGRLLIGCGVEVIEFEGVQLPVYQFSNEQL