Scaffold Ga0315907_10002830

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002830
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21277
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F002060	Metagenome / Metatranscriptome	597	Y
F068743	Metagenome / Metatranscriptome	124	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000283020	F002060	AGG	MDYTSIILAISAAILSGMGTAIISGIRETRREKNRQNEREQDQLKLEIKDLKISLYKLERDLTEWKDKYYNAIQDLIVVKSELENALVQLNLVELNELDSEI
Ga0315907_1000283021	F000671	GAGG	MNKILCYSCNKNKHKLNAKKSSLLPINLLMCETCINAKLEPRWVIILAGRSSGADHVREFVLKKRYLGEEISASELLV
Ga0315907_1000283022	F074876	GGAGG	VEEYYEIINIVYVYPEKVYGTVEQLGAFASMVKYQKDGTDYEVLLENDEFAIVDEIVFHHVEENNE
Ga0315907_1000283034	F068743	AGGAG	MPWEIKQNFAGCKGYAVVKQGSNELVGCHAGKSAASAQMRALYASEADEKKMHDKKKKIY
Ga0315907_100028304	F001176	GGA	MDSPPTDQPSGAVTAAEVGRKKPSQGKFRSGIQEKRPIKIDRNRHGIRRETTIVPKKTKPKKV