Scaffold Ga0315907_10002751

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002751
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21661
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (56.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020143	Metagenome	225	N
F033425	Metagenome / Metatranscriptome	177	Y
F045093	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000275114	F020143	N/A	VENLDQLLATMKKFEPELHKEFRRELTKSVKPVAKLAQSFVPHSPFPGWRDVEPNYPAQWGWANDQAHRGRTIGENKRSRWKWSQTEVIRGIRVSSAKTKVQRVKGTTFSVTALAIVNKSVPGIIYELAGFGTSKSRSRTRRVSRNRNASESFIAKLQGTANAAGYNEKRLIYRASQQLGGQVNDNLYGVLKKYLGENFRG
Ga0315907_100027512	F045093	GGGGG	MQNANKLKIVASGKPKKKLGRHTTAMVKAMTGRNDIDAVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE
Ga0315907_1000275139	F033425	GAGG	MAIITSQVTVTGTRQSIISVDNVTRDVLLHAKHEIFIGNSGVTSTSGYIMDNGDVLRMSLVDGEDLWAVTSGGTGTLHVLASKVD