Scaffold Ga0315907_10002623

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002623
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22311
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001182	Metagenome	755	Y
F001424	Metagenome / Metatranscriptome	698	Y
F003662	Metagenome / Metatranscriptome	474	Y
F021490	Metagenome / Metatranscriptome	218	Y
F064494	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000262310	F001182	AGGA	MNYGPTPNCPRGLFEFACSVEDVDLICFLEYSPEEKGSVDSLGSPYEPDLEESMVLNNAYIAGTDVDIAHIILQSMVDHIEVSALEKFKDGDE
Ga0315907_1000262311	F064494	GGTGG	MTKDEIFKLIEDNGLTLHGDIEHFAALVADRVYAQYLEQPTPSQAGVISITVPEPVAYLCENATGHRYFRWKKPSGIYKPIALYTKDKT
Ga0315907_1000262316	F001424	GGAGG	MVQQVEQLSTGYPQSLDERVFCHECQHSCMVEQRQSMPAEQMERHRKVNSKPLQWMFDQAKIRNGWATITWSEHQCGQTGLAAFPTDVKHRCHLFQAKASAVESESWWLT
Ga0315907_1000262320	F003662	GGAG	MKSKLATVIFKGQEWVVIDSTETRDEKVFCKLMSLDGTTVLHAWVDINLIVGII
Ga0315907_1000262322	F021490	N/A	MRRDEATRGWGADECGQVDMCIVLDRSGDGPESETSEDEMTDLLTAMHLSVMLLDLKIRMMEAIQEERFDLAMTYHLLILVRTDELQAHRWAMSPKAWAIYETIHP