Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10002573 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10002573 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22558
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (80.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22558

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (80.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021754	Metagenome / Metatranscriptome	217	Y
F023321	Metagenome / Metatranscriptome	210	Y
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y
F074392	Metagenome / Metatranscriptome	119	Y
F091391	Metagenome	107	Y
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100025731	F021754	N/A	KLNQKDYSNFETQKAILLEYLQVMIAIEDWHGVSDVANDLRELEAKQDSKYKSK
Ga0315907_1000257312	F023321	AGGAG	MFLNQPQLPTFYTWNDIQRKAESATIKTIDFNKILVDHTIAYFDSVTDNSFTTYTKKVVNLNNNIAEDAKKIIKSENKESKA
Ga0315907_1000257316	F091391	GGA	LTKIDSDDKLSIMAEIYTFTPKKKSTDENEELNRLRAKLLELHEIRDALNKEIRYTKDAIKLLEKGEK
Ga0315907_1000257319	F053899	AGGAG	MTRRAEFEAVMKRIQNLEEYEIEIVMPEEFQFDGPVPFDMEIAGGVAWVKVIAASMEEAKFKVNEYFESKYK
Ga0315907_1000257320	F055551	GAGG	MNTSKANTSKPWMAPEYDVPVLENEEMWSQRVIDEQAGYLWLDIDREENERKK
Ga0315907_1000257349	F095154	AGGAG	MYACGERKFKTLRAAVAFAKKEFVRTGVVLGIEPVVVLNKEPGYIAYLAKGMTL
Ga0315907_1000257368	F074392	AGGAG	MNNELLTDIARQTGGSFFVDVFKTHQERYALQLLSEVYQVFQKQQFDGYAIDFWDDIVQHFQLDNTEVEKLSKRNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10002573

Overview

Ecosystem & Geography

Associated Families

Sequences