Scaffold Ga0315907_10002147

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002147
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25458
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (67.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014135	Metagenome / Metatranscriptome	265	Y
F022413	Metagenome / Metatranscriptome	214	N
F029748	Metagenome	187	N
F030669	Metagenome / Metatranscriptome	184	Y
F030988	Metagenome	183	Y
F036228	Metagenome / Metatranscriptome	170	N
F087189	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100021471	F014135	GAGG	MSKGLMLDYDIADKITLLTLQDQLKYLRKELEDYKEGKWLHPEDVVNNAALIAALELLIPYYGGTV
Ga0315907_1000214712	F030988	GGAG	MKHWNELTDLESAIIRVGEFKNLFKLLVAGSENYVDVKVLQSAIYTMEGMIDDIDSTLYEKFQTVWDAVRDEETEGGEEEFTFDTLKEEYEFSFPTMNDNNWDNTNYSKVTISGSENQGTNTTFEEDEAFKDLEKAIKNWHKATP
Ga0315907_1000214713	F029748	GGA	MMKFICGCAVGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQPQQNNQQMKMESI
Ga0315907_1000214727	F036228	AGG	MSDGGKGSAPRPFSVSQEEYANRFDAIFKKNIKSAEEIHSDKGYELGTKEGYEAFNKKRQDALDKLHTANEELGLYDDEYDAIHKYNEETKEVKFRQLNK
Ga0315907_100021473	F022413	AGGA	MLLAKPKLTNTLDSKQFKSFAECQEYLEAYTDTAMPLVEWIAIGKILVAETMTAPEFYPKKVKGQIVMTKFDIEEFA
Ga0315907_1000214766	F030669	N/A	MYYVYGAIGSKATEKTELLLNICKRRYKLFILGEDYTVAQLQKLIPNTNFVPHIYHEFKYVGGINELHDYLYDELRTQND
Ga0315907_1000214767	F087189	N/A	MKNLSTLHSIVALLIMCNFAHAEVTLVEDNSSTNKVYMAKVISKKPIIEKVPYMATKNYCEKHYGTVHYSGASVGTPVILATTPLNQKPICNLVTHEEFYNVVKGYQVTYDFKGTLKTAILNNEPSDYVQVYNVP