Scaffold Ga0315907_10001817

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001817
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28155
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F018705	Metagenome / Metatranscriptome	233	Y
F046898	Metagenome / Metatranscriptome	150	Y
F056570	Metagenome	137	Y
F091499	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100018171	F091499	GGAG	MSWDELDAIGQVDIREATQQRDDLARLTLRVFSTEDGNKLLTWLRDMYVNVPIAVPGTDPSH
Ga0315907_1000181718	F018705	GGAG	MENTLKPFLTRLRPETRMLLDKAAEDQRRSISSLIDQCVRDQLQPRYGQLTPRLDRFLSGIKQ
Ga0315907_1000181722	F014143	N/A	MEGLIMNTRFLKHVRTIFATYDAPPATIRSYQRQWVKSIRRLGDNWLVAKQIQRIQS
Ga0315907_1000181723	F046898	GAGG	MKSAGRDIKQRQLDIFEQRDHQFLERCRALAVMLCKQNGQVSINDIRQFIEVPSGVHPSVLGAVFRTKQFTTVGFTEAVHPQAHARVVRVYSLAATKE
Ga0315907_1000181730	F056570	N/A	MKVTLYQANANMLREAQRVIHQQNMARLAELNRQTDQQQKVQEIKTQWVKVNQVDVMA