Scaffold Ga0315907_10001800

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001800
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28360
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (87.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F011647	Metagenome / Metatranscriptome	288	Y
F012001	Metagenome / Metatranscriptome	284	Y
F028457	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000180019	F001531	AGG	MDWNKIKEWNYVIDAVASEYHKKFQMVELKDIKQSLYQWFYEHPNKVEEWEKIGDKDAKNLIYRSLRNHALDYCQEWKANTSGYETSDLYYYEAGLVEALLPSVLRGEINVGHKLDLGGVKGTSAPAEGGNLMAMMIEIDYAYWKLSKEDRKILFLRHAESLEYKLIADTLELGSEDTARMRQRRALNRLIRRLGGFKPYNDVDLEKHNENHSDGEKQPAKTESKTE
Ga0315907_100018005	F012001	AGGAG	MFDKEKVKQIALSYLRAAAASAVALYTAGQREPKVLAAAFVAGLVGPILKALDKSAPEFGRTEK
Ga0315907_1000180052	F011647	GAG	MSSGQRKRHDGFNKSIMRDGMIVILRKDGREKTRLDPKTKEQVKGIK
Ga0315907_1000180054	F028457	AGG	MSTKGTKDSIAVVWCDNGMVDGKFMQGVTDVMLKSGVEFATSLRSQGNQIARQRQTVFDYWFDKTDYEWLLWVDSDVVISPEKFRLLWDNK