NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001774

Scaffold Ga0315907_10001774


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001774 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28630
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035674Metagenome171N
F037689Metagenome167Y
F066436Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000177415F037689AGGAMTKPKTIKDWQKVCNNLNAALQSAMKHEDELNDDIEHLEKQLLKLEEQLTMSVGVIKYLELQIVRSNPV
Ga0315907_1000177419F066436GAGGMTEHDTNLRDLASMFAMAGLIIRNREGDNLAEAAFEIADQWMEARKEPEEGLAAIKKGKRNVRKHEDLR
Ga0315907_100017747F035674GAGGMKPGQEACLRMADYQYRCRNQDMMWRWLFTWAAWSDNVDFFSDPRVPVFKPRKSKRRWKHLTNTETLAIIKQLPNWQTDHLNTFIFKVLVEDKLKEKNS

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