Scaffold Ga0315907_10001645

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001645
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29877
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F031484	Metagenome / Metatranscriptome	182	Y
F060868	Metagenome / Metatranscriptome	132	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000164513	F001515	GGA	MASKSSFDLDFGYGRKGEQLVDELLTGNLTVEVKRDRKWFKTNNLYIETECFFQKVGDWAPSGLGVTEAGYWAFVLQESTLIVPTAVLRYAVKEFGRAISCFIPPNQSKGFLITVDDLMTATRKYKDDDRVE
Ga0315907_1000164524	F031484	AGGAG	MNTTKLVAMATTYARAAVPSVVALYAAGVTDPKTLAYAFASAFIAPLWKALDPKAKEFGVGSKK
Ga0315907_100016453	F073256	GAG	MLQEVDTIQDLRVWVEENMPGARLTVDSAGDIVIHTGLGASMGGYLYETGEAE
Ga0315907_1000164549	F060868	AGGAG	MATYTFRPPTVDEGPAGGHRLFYFYKLKRGITVVKDGGTWSTLRYSVDEDLNDYDVVYRGGYNHTVDEATKAELIAASIGVTEDNFTVQ