Scaffold Ga0315907_10001329

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001329
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33712
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (83.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055468	Metagenome	138	N
F065717	Metagenome / Metatranscriptome	127	N
F073466	Metagenome / Metatranscriptome	120	N
F078642	Metagenome / Metatranscriptome	116	Y
F104702	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000132917	F065717	GGAGG	MSLHRQRTHPEYVEGCFGCKASTLELHPGDAAHMRVVPRKKWDAELNAYADARKQGIQPAGTSMKAVKDAVTASENLGKPYNGEKMAPAHRLANKKVAKAISKLGI
Ga0315907_100013292	F078642	AGG	MKSFSGGKKPANQGSAGKAYEQPVKKSGVPSIAKPGMSKTMFSAQPSGTRGGKAPKRAGK
Ga0315907_1000132922	F073466	AGAAG	MTYGFDGSTLVDELNRLANGGASYPSRTVYLDQAGAANKWAGTTGLEILGALNQKAQAGRSPKDYKGLNAVCNELAGTSGLEAIPALREVAS
Ga0315907_1000132933	F055468	GAGG	MVLENAAMFATALAGVVIVVSALAWVFKNWLKNYLQELKPNGGSSMADSIKRIEQRIDYLTEQMMDHLKGHNGN
Ga0315907_100013299	F104702	AGGAG	MAYYFLPPTVEEGPAGGGALFYRYKLTRANSVLQRTDGSYYSVRTPSVDETQSALYYYPGGHKNLISDAERTSLIAAGYGANIIEE