Scaffold Ga0315907_10001162

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001162
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36234
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018535	Metagenome / Metatranscriptome	234	Y
F028501	Metagenome / Metatranscriptome	191	Y
F037206	Metagenome	168	Y
F041172	Metagenome	160	Y
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000116221	F102853	GGAGG	MRELVFIYYIIIAVATIAFLATVIPQPPRPTAAECGVAEISPDMSPQDRAVCRQLRQIRHRM
Ga0315907_1000116223	F037206	AGGCGG	MKCQQCGGKTHVVNTTQQPGGIRRQRRCPSCKNNAYSAEVWVAGNVMVGKSIYTKDEAALIKKKGVDARRANEDRRKDDAL
Ga0315907_1000116225	F081291	AGGAG	VSRLDYWKAKLRAAQTEERQRRKELNQMARAFERALEQVDDIQKRIEHEKAKLARAK
Ga0315907_1000116237	F018535	GAGG	MKTQIDTSAPWYPAHLWPYTYTHGHTELLCFVDWEPADRSAGWGGGAWLIHAFAGGVDIIDLLKDPIIKNIEQEAAEALAEGPTC
Ga0315907_1000116239	F041172	GAGG	MAKLKTAILRAQETADIIGANELLLWQARDALSLAILAPTDAWNCLTNADRALTLINAYLMEVELCKR
Ga0315907_1000116241	F028501	GAGG	MKTITAKYTGTCAVTGARILAGDLIQWSKGRAVLLERRRAAVDTVTLYGENGPNTYYQNARGRCIDAPCCGCCTL