Scaffold Ga0315907_10001148

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001148
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36381
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (11.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F033727	Metagenome	176	Y
F058003	Metagenome / Metatranscriptome	135	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000114816	F088280	N/A	MKSLFMNCPECDGAGYVTIDLNDTHIPYEQNPVDFTCMSCDGKCIAIDKDEVEERIYQIDDMIEGMQTRMRLHSEFIMTAKKGLLHELAEKYVYRLDTCSRALGRLINYKKKLHNLVE
Ga0315907_1000114817	F033727	N/A	MKEQAKVLSEVNEVTRSMVKHYLQKHELSLNAFSKLVEVRQPNLHKFLNGSNLSSRSIEKLGEFFSK
Ga0315907_1000114828	F025465	N/A	MDELTIITGKVNLDTTYLKIKLSLEEIKQKHGTRTDLIDSMERSLLDLQEVKIAYDAIEKELRATLQQNFRLEKLLQEEKFKVRDLQIQLKIKDSEL
Ga0315907_1000114839	F058003	N/A	MAKKNLNVNVDTENIDVNVERKDGDLKVNYDSKKLDVEVNKTADNVEVKVDAQGGLLKFVGNIIKKVLLRRLK