Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10001139 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10001139 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36525
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (96.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36525

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (96.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y
F027494	Metagenome	194	Y
F065707	Metagenome / Metatranscriptome	127	Y
F077027	Metagenome / Metatranscriptome	117	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000113910	F077027	GAG	MNFNLNIHRVKSIRLSAIRSSETNNMVSASRDLVIETEEGDFELTLFSAYVDQDSDQELLEVKV
Ga0315907_1000113915	F017819	N/A	MKKRSKYRPRIVLQNPLEFVLSGLKPVRNLPGIYIDVQLRNRTALEQIRKGIATKEDIDMLIGAFNITEALAIMGKGSDWLDEIKQGQDALLDLSRRGVANGMRFIMTAKQWESLKLVMDLHEEQLAHATVYDIEKAHDFVQTIIRQGKARAIVKIQKEAT
Ga0315907_1000113919	F027494	GAG	MKYKTEMTFPVELTFEVLPPMDVDGVELPAQLDITKILLTITGPSGKPRQVDITKSFSEEQVMLFEDEIVENYNDENPAIRT
Ga0315907_100011392	F065707	AGGA	MRPAEYSTENPPRPIDCVETKEYINSLRRRIEVQTDSMEHLASQVHKLLGKIDQLNGEIEKLSLDLGIKREEVPPGWQEVKK
Ga0315907_1000113920	F078264	AGGAG	MGRSPKPRTQVVPAHPEPYIRQPMKKRGRPKRSGPKKKDRYDAVRASPSKRPGQRWITVSLPEDAYYMLKELAAFYKVGMGAYMQSLLVPAFDQAYKESLTLQRIANNREKAKDEIQNRDDVPRRTHF
Ga0315907_100011395	F015204	AGGAG	MTFTEWWSQLTKAEQKVIGEHNAKYVWEECQKYTLMTIEEACKAQVAYDQGHTQGYNQARKHYEVQIAGWRLQPSVQPGMIWISDAGGEGGDFHIHELAEVIGKFYKEKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10001139

Overview

Ecosystem & Geography

Associated Families

Sequences