Scaffold Ga0315907_10001133

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001133
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36618
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (93.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014358	Metagenome	263	Y
F038590	Metagenome / Metatranscriptome	165	Y
F039040	Metagenome / Metatranscriptome	164	Y
F053072	Metagenome	141	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000113327	F039040	AGAAGG	MTTVINTTIDTSILDIARNSLVDGVSKTGDLIQGYADVLCKVFNTKNMAGETIEHWFNLVGKDKKGIKEERARFVTAMMARGHVKPDGKPSATVDTYWMRVKEASGYVPKGRVTGGTDVDSKTLAELKTMINRILKSEEDGQDCNASMFKGNLMEVFEGMGGDVDNLG
Ga0315907_1000113328	F014358	AGG	MNDWKMCIDCGDDVPTERYQAFCKFCEQDRERSAGEERTSWCVVQEYGKGNYQYVTPTSAYTTLKQTNQKELRG
Ga0315907_1000113330	F038590	AGG	MRPRHVKVDRLSKPVTQTDYLQMLGEAMKFARVEESKPVLNARELPIHTKREVK
Ga0315907_1000113340	F075680	AGGAG	MGYRSNVMAVFYTYDPNEYPSIKLFIDEHVPEWCRGDEYMTTFTGSNNLHGIKFDLQDVKWYESYPDVQGFEQALKKFEKLADEGSNWNWEFVRLGEEVEDVEQRRSYNADPLLYVSRSIECDY
Ga0315907_1000113342	F053072	AGGAGG	MVVVDIGYRKLVMTKEKAMMLVECLESADVYEEKWWSDDVRKEKGMDSTYTYHVYPNEAHFGMRIVSDTHYQMARLAGKPQEK
Ga0315907_1000113345	F080867	AGGAG	MSMNTLSLSNVVVGEDLQKSLDKEGMKMSAVYDTLDPVVSRLATLNPLWTFVVVSSGHGSGNNRIAVGFSVKLDGEELGQIGLSYMGNRGKVISISNDRIGKGRQRSDSYRTQDADKAILMAKKMFGKMNPSERIQKAKDAAERVVSRASWNKERERTQHQSLVKNEMLAWAETKGNAMFLEYLKAEAIPSLRHKVTVSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDLGKYLVKIGDKVDLYEDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVSSEIFVLLVDELTNVSEGV