Scaffold Ga0315907_10001068

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001068
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37640
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (41.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020538	Metagenome / Metatranscriptome	223	Y
F075706	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000106810	F020538	GGA	MIPIPTGCARFLCYGWIITAICFLLGLNKNGEDLSGAGAFAVITGLLGLYVTRPRKD
Ga0315907_1000106817	F075706	N/A	MNSFSDWDDVLAISAIREAAVAYAAQEAPEYLEESPEGVMVIGEDDYPYVLERAIKDVGECVFYFSRGADDQIQDHTHRRFAGKYFECDGAGQIGGPYDDNNADIILDLLSDAYEAGCVASPASGATVSVGGDFPDDYFVKLCVSLVPLGQQIEINSTLYVRTKSGLVAQ