Scaffold Ga0315907_10001023

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001023
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38421
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (41.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F010994	Metagenome	296	Y
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F025689	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100010233	F015082	N/A	MNDSDIYWTFATAHEYGGGFFQALASAGLKADPGNKRRILTAFPEMIATYGTASRLHKALRGDVLL
Ga0315907_1000102332	F010994	N/A	MDLPSLRHFSNSGIYFVSSDPVEALVGEAWVPAVYTDKGWATADGASLLLGIEEWRNASEERQVTKGDLSQHQSGDEGGQASKTGSSNRPRQSRKKPQA
Ga0315907_100010234	F021761	N/A	MITHPIVNRITVLVVMFAIYAAGYAGGRDQATLAHNQHPACNVNLKP
Ga0315907_1000102361	F025689	N/A	MEAQFHGAANASALRTLHAKGDWNGLLEYALLLAEQEASQRSQIHWLAREAMQSCGIQEWHRAAAHELLAGSD
Ga0315907_1000102365	F010762	N/A	MNETTIKAAFSDWWRDSYGVPPGPHAVMTHVAFAAYLLTLLELMNDE