Scaffold Ga0315907_10000939

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10000939
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39865
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011647	Metagenome / Metatranscriptome	288	Y
F050167	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000093916	F050167	AGG	MTTTTAEQIENYLASISLTLADLSDELATIQFDLEDADGYEPRGTVLKALPNQTRFKPKSVWVSLGNGKYQHLTGEKGLVAKHSRLDGYTSVVFRP
Ga0315907_1000093929	F008808	AGAAGG	MNKEIPPCPQCGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLFKYADKPEQIKSITQSTYMTLFTAETQPEAIKDIVEEMIVESQMMEIDDEIKQLLEGGKQ
Ga0315907_1000093932	F009064	GAG	MLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNVLHKKRHSLPDVGNNVEVRSIRTQDSIPFWRKDEGKVIIGTKCLDLEYFSEVEIFGAAYPEEFTKPEYYDSYINGWRIPISGFTHE
Ga0315907_1000093953	F001599	AGG	MSNKDSVALVWCDNGMVDGKFMQGVADVMLKSGIEFATTLRSQGNQIARQRQTTIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNRDVEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLIKVDAAGMGFVLMHRSIVPKLREIAPDGQLFMEMGRGNKFIGEDIFFFALCDKAEVPLYCHTGATVPHMKRFSFDEHYYRAFFGKPKEEPKSKLVTPNKKIITPR
Ga0315907_1000093957	F011647	N/A	MSSGQRKRHDGWNKSIIRDGLVVILRKDGTEKVRLDPKTKEVIKGNK
Ga0315907_1000093960	F001706	GGA	MAYHWQDHPVEVEGCFGCKVMNLQVNAGDAKRDIPDKKWNAELQAYRDARAQGIQPAGTTMRHVEEAHKASEILGKAYNADTMPKTKDITPKAAAVMKEIGQV
Ga0315907_100009398	F006544	AGAAGG	MTTLAAIQGDGWCVIGSDSRSSDDSGRPIEMATHKIVENNGVLIAGSGSGRGSNLLQFGWKPPRPKLSEDLDVFMTKRFIPSMRKLFIDAGYDMKEDGDYASHDSQFIIAIRGILYPIFEDYSWDRDVRGIYYSGSGSDIALGAMEAYRVRSTNDADKAEKIIRKSIEIATNWDIYSSGPIITKIQYSK