Scaffold Ga0315907_10000792

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10000792
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44298
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (57.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F025689	Metagenome	200	Y
F065564	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000079213	F010762	AGGAG	MNQTTLDIAFKEWWEASYGRPPGTHAVMTHVAFAAHILELLELMQDERPN
Ga0315907_1000079218	F025689	N/A	MENPLVHTMEAQFHGAANAAQLRALHAAADWAGLLEYALLLAEQEASQRSQIHWLAQEASAALRSGLEQWHLDAARELGGH
Ga0315907_1000079266	F065564	N/A	MPEIKLNVTNADLARLNAEAAAHGIPRAHLIRQRALGDGGVARLTTAAYHALVADACAFMRGDLNRRHVETLVAYVIAHSHPSQATTGDQPAA