Scaffold Ga0315907_10000575

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10000575
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52313
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (72.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014850	Metagenome / Metatranscriptome	259	Y
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F028172	Metagenome	192	Y
F029659	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000057545	F014850	GGAG	MKIEETYEIAESDIKYKDKDVVATIKITAGDFKDTVFHFGEINFAEEENPDGTYSIGFNYDIISEEHKALQGNDIFEAYLGEVLNDLLKHALNEAEKRYKNELGTKNTETPDIG
Ga0315907_100005755	F020540	N/A	MSKIQQFGRVFETFDPSNKNHRKIFHDVLRYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGKYYIEKEFGVLIDDDPFLNAEIRTRPNPCPHIRKKLK
Ga0315907_1000057553	F029659	AGGAG	MLQNINSAIDTFQGTKTQFVKTFVKNEELAKPLNTFIEAQTLYAKAVAVEVNKFFTTLGMSAYTFDAKKAFSKNK
Ga0315907_100005756	F021534	AGG	MKTQTENEVVHFLQELLHPEGFGWSVTAEVRKESKRLLIMIESESNEQDSAIRQSVRNV
Ga0315907_1000057574	F028172	AGGA	MKILSEHYGTDIDREAHVHYDEGFYKVRMRNEFGSYFVAFFNNIDEAENFAENYVLGESHEP