Scaffold Ga0315907_10000528

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10000528
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55162
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (70.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018701	Metagenome / Metatranscriptome	233	Y
F020339	Metagenome / Metatranscriptome	224	Y
F062691	Metagenome / Metatranscriptome	130	Y
F062695	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000052824	F062695	AGG	MGKFVIFTNASLNHDGDSIAINKDIVASVFELIQPDSNAQLQPRTVIYGVNNIDWQVKEPYLEVLAKLNAD
Ga0315907_1000052836	F020339	AGGAG	MSNITKVAKQLAEANPKISKAYKYDLVMREFDNKVELIGLVDDPTYDIADFVGREMLFPKKWVTLDVYEPTTRVSV
Ga0315907_1000052837	F062691	AGG	MSEIVCITFKTHQTIIGEVVDKGEIGVKVKNPMQVIAVPPRSASDPGGVGFAPYLAFVEEFDKGITFNNNDILTTNTPVSDLLAQYRKMFSRIEIAPPGLVI
Ga0315907_1000052845	F018701	AGG	MSAASDKFENDVAKNINKIPGIKALRPKVSTEYSDVKIEIDKFKGENAIWLEVKMSHTDNLSNPRVFYEKGKWHTTYTTPAAKHTVDILNKSAQAKKFIKDIAKFSGIPEKVIKIPTNKGGLKEEGAVPLSVMKAYFSQPSINRYIANEENYNLGDVVTEHYTIGKAKPAYYMQAGDDFYMVSKKNPLKIKGIPALSGSGDFKVRVSTRSEFYEVQAEIKIKKMPDSKFSVAPGTKKQNPFLSMSK