Scaffold Ga0315328_10166572

Overview

Basic Information

• Taxon OID: 3300031757
• Scaffold ID: Ga0315328_10166572
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014551	Metagenome	262	Y
F023712	Metagenome	209	Y
F077389	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315328_101665721	F077389	GGAGG	MKKAKNYKEAMLRYFYAPMVGAWLSVAVIAGVTTGFD
Ga0315328_101665722	F014551	N/A	MRDMFKFEYNPARHEGEVNHGNHVYNYLGVIVDHFRNTTEGETFSGVTVEIHDNQGATGQTRRFRWDRMVKAINLVNMAQAIHGGRA
Ga0315328_101665724	F023712	N/A	MIIPVMRDKITYELSWKNEDTNRVSSKKFTGEEGKDHSAMDSALELAQEADGNMWPWVLERDGQEIAFGWGGDQLNRGRLFPTCG