Scaffold Ga0315328_10040637

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315328_10040637

Scaffold Ga0315328_10040637

Overview

Basic Information
Taxon OID	3300031757 Open in IMG/M
Scaffold ID	Ga0315328_10040637 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2564
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315328_100406373	F009536	N/A	MEKDVMKQALELMPGELKEEIKSNLDNPKSYTRLFVKICEEIDKMKVVLPKFTTLKNSILKINKKNHSKITDEMKHYVPKTQSTLSVKDIEYWLQTAKKGDQLIYYTGGTFDRRSVKDESVFRKVRNLAMDYDNIPFKNKKYQYRGSVRGEWGCNYKDIITLVQKRVAKEQRDKIWDEEKKSYVPGNIISYPIYNYIMIKQ
Ga0315328_100406374	F013896	N/A	MICDKCNGNGFTIVKGETIQCKKCLSSGEIKETLTPPKYLDDDLTRVYQTLYEESLKLSENTDPGIVAASLMAIGSRIYKTILTSEDYDKMMEKILETDVQPYKKETLQ
Ga0315328_100406376	F045144	AGGA	LTWQKGLYYHLSRTGKTIRKYPDGKDPRKQELFGKTRVCIKCNKRKSTLQFHWKTDYRYKDKVTKRLQRQCGPCRVKKDNDKYSSSADAFLKRKIATLLQDCHRYRGRKKVTLTSDKFFNEWTKQKVKTGLICPISGEKMTYTLGHGEVSTNISVDRIDSGKDYAKGNIQFVCLMANIMKNKYDNKNLLSWSNKIVNHLGRK
Ga0315328_100406377	F000563	GGTGG	MRYKFKITEDGKPEIEKEAMSFKKLLKSLVNPNPKWTGFMSYENKKGRWITHSILNGKRI

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