Scaffold Ga0307475_10696355

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10696355
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 810
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004042	Metagenome / Metatranscriptome	456	Y
F007884	Metagenome / Metatranscriptome	343	Y
F010654	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_106963551	F007884	N/A	EDFHSLLRSQGTQKTRLGSDIESRFWLSYRPYESKSGAREWFIGPVVTWLHSQDDRIAGITQSGSGGDVLLAGITTYVGVRPGMHVWLGMDWDVAHSAGTTFMPVRRHISFGITRQFRFHFK
Ga0307475_106963552	F004042	AGGAGG	MNSRKLVLLFLLGSVFVPVSQAQVKHIEMRVEGMT
Ga0307475_106963553	F010654	GAG	VKQHLERQSGVQKVDVSLIDGKVDVAPKEDGQIDPAQLLKAVYDSGVTVAEMDVTARGKIVKDASGNLAFEVSPNQSFAIAPNDLLKTVEPFVNSSAALT