Scaffold Ga0307475_10074128

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10074128
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2608
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F040993	Metagenome	160	Y
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_100741282	F014771	AGGAG	MRAKGSITQLIRKPRPGYILGEDGRLVAFDESALAGLDPQELSIGDWVEYEELDRMEGRRASRITPLIQRAEE
Ga0307475_100741286	F093562	AGGA	MSVRSRLLAEAEKQISNPFLLCALVSLRTRQVMTAGNANTSTAQLVDSALGELIAGALEFERGKPRRPPLIRAESRNEESNSGLELPEVPAVSHTEEAP
Ga0307475_100741287	F040993	N/A	RGLASAFLLLVMLRLLGQGLLLGVAGAALILLLQELVDPTLLFWSVPWEALQLVLSRRHRVNHLWLQRTQDLARESIGRSIESDGFAMLDGFVVIGVGRNKQLLRWTAECACRGIVQEREGASARQGCKAVRFLVAVWLMTGGLLATSIWRGIDLPGALLIALLSAAAGHALAQPVEKILANWLAIPASQHEDALGFGLEVEPIEFPEWLWWQGSLGFIVRRVSKEEPGKD