NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10072865

Scaffold Ga0307475_10072865


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10072865 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2629
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100728652F046497GAGGMKFGNCVHRGKFAPAGLFVFLVVSIAPARAQGPAPETAPTLFPGGALISYNSVFTTRGAIPDFTEGIPPTARPTFSHDGIFNLTWGFYRNFDVSLVVPIVTNDFKMTGTSAQPTVGGTVLGDILLLVKYRFLRNDSKRGTTQASVTIGPKFPSGATSLRDTTEKRLPATLQPGSGSTDLFLAGNFTYTGLFGLKRLVADEDFHTLWRSRGTQATRLGSDLESRFWLSYRPYESSNVGREWFIGPTLVWLHSQDDNITGIKQKGSGGDALLAGVTTYVGVRPGTHLWFGMDWDAVHSTGAAYMPVRRHISFGITQQFRLHF
Ga0307475_100728653F004042AGGAMNKRKLALLLLLGSVLPAVSAAQIKHVEMRVEGMT
Ga0307475_100728654F000092GAGVQQHLGRQDGVQKVEVSLLDGKVQVTLKEDGRVDPARLIKAVYDSGVTVAEMDMIARGHVVKDSSGGIVLQTQPNQSFTIVPNDLSKSLESLAGAPAEVTVRGELYKKSAGKKKPDPNAPLRLLILEVVKKDP
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Biomedical Sciences Research Center "Alexander Fleming"
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