Scaffold Ga0307475_10033333

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10033333
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3762
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F024902	Metagenome	204	Y
F064567	Metagenome	128	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_100333331	F064567	N/A	MPIDAKLLVMAQRAAEAEGLDAALVCAVVEQESGWNPWAMRYEPAFFAKYVAPLYSNNKVGATEAYARG
Ga0307475_100333332	F009917	AGGA	MGGSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNIIAERQGIHLEEQPMVNYVDLRNGGRHR
Ga0307475_100333333	F002853	GGAGG	MGRGAQGQTQSLTDNQLNQTNALNQQLLGQEQSVGNLVVPQFQSILNNPGFSAADKAVITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0307475_100333334	F007488	N/A	MKIRAYEESDLEELRAIHARQGFGYTFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPKAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPGIAHKFGKRLTRLGWVRDDQWTPYCKRLM
Ga0307475_100333335	F106044	AGGAG	MPNLMSNATWDFNPGDTVTLNAVFTFDLQDPNDNQTVSAVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0307475_100333336	F000781	GAGG	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRVYSQYVGSLASAPVTFGSPAMAVAGGGSSGPAPLPSSGSGALPNGLLRGGNGFGLVPGARVVKQTVL
Ga0307475_100333338	F024902	N/A	QQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFTPSVKVDSWAPVRGMN