Scaffold Ga0307475_10010520

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10010520
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6127
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004042	Metagenome / Metatranscriptome	456	Y
F009247	Metagenome / Metatranscriptome	321	Y
F069887	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_1001052010	F009247	GAG	VKQHLGRQSGVQKVDVSLIDGKVDVTPKEDGQIDPAQLLKAVYDSGVTVAEMDVTARGK
Ga0307475_100105207	F069887	N/A	MRFAKSILLVVMVVAFATYAFDCLAMSTPDAAMECCNTMPCSSHGYEHSQECCKTMPSMHALFVQPASTHSMSFSPVFVAVLTLFNASPVLDSPSNVLTARCHVPPIPPAAAAAPSPLRI
Ga0307475_100105209	F004042	AGGAG	MNTRKLALLLLLGSALVPVSQAQIKHIEMRVEGMT