NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10008617

Scaffold Ga0307475_10008617


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10008617 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6686
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010061Metagenome / Metatranscriptome309Y
F051858Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100086172F010061AGGGGGMLFAVVRRGKRSGVHLYPHRYKEDDRYHVSLVRKGPHIPLADDRDIPDYLANGYLLGMSNPEAKYKPTLIRPTSIRGWE
Ga0307475_100086175F051858AGAAGMRTPGLRASAGAGTEALDRDEAPLFVRSFPRYNRWAVKCRTFSRFPLAVLTTAVSFSVASCAVALGPGYTIEKQEIRVRFVAEPEPRIQIAADYHLQNTGTRPLEELELRLPGRRFRSDEVRATWDTKSLTLAQASDSPRDTVMKLAEPWKVSARHRLHLTTEFLRAQEGETSLRFSSDAFFLPASGWSFELLPPSGLFPTGGAPPRKWDLLVTVPDGFQIHTSGTQKKSSRKRQETVVRAEQGATDPYPFVIAGRYSTAEIGNDNEKVHLWTSKQQDAAKLRDTSDALARVMAEYDTAFGERGKAPPQTWIVECPVVAGCFTNLNPLRAKLLAEVGNEPTTTEMISEDTMVVDLSEGTPALATRTAPSLAASWLGYGQSPAFFEQRLPLTMLPVFAAAIGRDAAEGGDARAETIRRALRLIPSGEKPPREEEARVLRVKSFLLFYALQDQYGQDTFRKATQHMLNARRERGFDLNDLIAAFEQETHQNVAEFVRIWMKRPGVPEEFRARYEGAAAANAVKDKEKTP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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