Scaffold Ga0307475

Basic Information
Taxon OID	3300031754 Open in IMG/M
Scaffold ID	Ga0307475_10004367 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8731
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8731

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002291	Metagenome / Metatranscriptome	574	Y
F005190	Metagenome	409	Y
F032602	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_1000436710	F005190	GGAGG	MSESVHDRALQLIAQARVEGIAEAHSTWLRAHLDQCEFCTEHAHQTDRALRSLRTAVIALPDGLASRTQFRVRLRAQELREREPKRRALWFTCAVSWIFGVATAPYVWSLFQWFGQRTGVPKMVWEVGFGLWWTIPAFFAVAVLLMENSRRGEQADWINQGS
Ga0307475_100043674	F001811	AGG	MRGFSSSVLSCLERERLEEELSEARIRGRNLSRLRQLTHRERVALDEREQAAQTRLRDHDAEHGCQR
Ga0307475_100043677	F002291	GGAGG	MSSKPLLQGSLVLLWAGENPATHGALLEELEAAQIPFSDKTLGDDEVAPTADPLPIGWKPRFGFEVAVLSSDLTAAKEVLEELLDEEPADLEIPAREGVAAAEPRLVVATETHPTVEVWSGNDERIAQFLTAAMQENEIPIHIENPGDETRIYVSAANDKRAREIVREVVEGAPPE
Ga0307475_100043678	F032602	N/A	MYCPQCKAEYRQGFTRCADCDVDLVHEPQASASGPGETGGHGENPEDPFCSFWRGDDPRIHAELCELLNEESIPHRTVRREDHLFNLNTKSAFEIGIPFSQFEKAEAAIGDAYGTEDEQQDAGCLLPYGRGYPAELGAAFPWQPSVKGFARAALGREEEPESVAAAAPEELDADEQSESIPTDWDPTSWNSEGATVQVWRSEQLYPGEMIEMALRENHIHARFDKANGRNAIYVTPEDEIRAREIVREVVEGEPPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307475_10004367

Overview

Ecosystem & Geography

Associated Families

Sequences