Scaffold Ga0307475_10002329

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10002329
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11443
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F003496	Metagenome / Metatranscriptome	483	Y
F010795	Metagenome / Metatranscriptome	299	Y
F031940	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_100023292	F003496	AGGAGG	MPATQPSKELRPLCHEHHAEMRLNQSLVNSEDNAKHTAYACAQPDCLVHYNIYRGYFILSRNGNTNELDMVPSVRCHHDGMPMYLAEIDQEKRDYRLWRCPQCDRRRTNEEGLIGLASQGSQDVSGKNAA
Ga0307475_100023293	F000232	N/A	MKHRKQNKPAPQTHPSPSAVPSYHRILVKHGLIEKTLSIPDAYNVFLKVGADPEVQKLRRQIAHGSKMKHVPALYLATAMGLQGMTKEELEALKLRMEEKRV
Ga0307475_100023298	F010795	GGAG	VSSYAERANDLVRAVHLLRQHGMVVGFPRQTAEGEIIFPVGEGFTLTADEIIELLECGELNAEGVRRSVEAHASPMRGAA
Ga0307475_100023299	F031940	GGAG	MRQHFCILNMVGDVLDDGELYFVEAAQTLDAANARVQSLAELWPGEYVIYDAATGERVPVTAGGKQR