NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307475_10002329

Scaffold Ga0307475_10002329


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10002329 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11443
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F003496Metagenome / Metatranscriptome483Y
F010795Metagenome / Metatranscriptome299Y
F031940Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100023292F003496AGGAGGMPATQPSKELRPLCHEHHAEMRLNQSLVNSEDNAKHTAYACAQPDCLVHYNIYRGYFILSRNGNTNELDMVPSVRCHHDGMPMYLAEIDQEKRDYRLWRCPQCDRRRTNEEGLIGLASQGSQDVSGKNAA
Ga0307475_100023293F000232N/AMKHRKQNKPAPQTHPSPSAVPSYHRILVKHGLIEKTLSIPDAYNVFLKVGADPEVQKLRRQIAHGSKMKHVPALYLATAMGLQGMTKEELEALKLRMEEKRV
Ga0307475_100023298F010795GGAGVSSYAERANDLVRAVHLLRQHGMVVGFPRQTAEGEIIFPVGEGFTLTADEIIELLECGELNAEGVRRSVEAHASPMRGAA
Ga0307475_100023299F031940GGAGMRQHFCILNMVGDVLDDGELYFVEAAQTLDAANARVQSLAELWPGEYVIYDAATGERVPVTAGGKQR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.