Scaffold Ga0307477_10062410

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10062410
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2568
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004555	Metagenome / Metatranscriptome	433	Y
F011322	Metagenome / Metatranscriptome	292	Y
F035415	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100624102	F004555	GAGG	MNHLFTLGFVLLLAAFVVALDGSLALRAIDRLAQSERYTGVQNAMTVTNAPIRL
Ga0307477_100624103	F011322	GGGGG	MNRLLTVAILAISTVPLCAQGRQPNAAKLKADARNLVGIIGSDKTKTQTYCQIYDLSEQLLQTVQGKDIKKAKALAEKDR
Ga0307477_100624104	F035415	GGA	MGPEFAALIDIEKQVDLDSRDGQEIASIVATLGESCPH