Scaffold Ga0307477_10006709

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10006709
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8108
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026079	Metagenome	199	Y
F057593	Metagenome	136	Y
F094334	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100067093	F057593	AGGAG	MTTAKDYRTYAKKCFTRAQETNSEESRQALLEMASYWMDAAMRTECLGDSRLEPEQQAAYPQIASQNLMRPVPYTQ
Ga0307477_100067094	F026079	GGAG	MQCESGNGLVTAHAGRRESAMVHIPPFTNFDPETAATLRAAYNEAIARLIDQPDFVRELIAKRLVTLAARGERNAHRLCDEALIVEGFLN
Ga0307477_100067099	F094334	AGGCGG	MVRLLPVAIVVILIAPLYAQDEQPNVAKLMADAQKVVSIISGDKAKTQTFCQMEILGNQIDEAILKQDTRKAAELAQKLTELEKNLGPEYLALVESLRSMDLTSKDGQEIMLTFDKLDESCPR