Scaffold Ga0307477_10006269

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10006269
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8403
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016192	Metagenome	249	Y
F050618	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100062697	F050618	GGAGG	MKRCKTHLVRVCLVVLVSVPAYCQRGTFGIDIGQTSDKFDSLSSVSGLEFGIDGQMTVLKSNAKQGRPSLVAGGEIRLPNDTANHAREYALFAGPRFKARDLSIGFNVQVRKIVLPTSLVNNQFFARDDMELLELPLVLRYNFLSNKRAWVEVLGAPEFSPRFRRHSSTTLPNPRLDHGYFVQGSVGYTFGKWYAKATYESRYFKFVPDPGNPSNLYNWKSNLISGGVGFSF
Ga0307477_100062698	F016192	AGGA	MKPLLLSGVILCSAAALGQASALSNQVTPIQIVDHPLHVSLTPTACERPLVGGAPDTHSYAQGERPWWEFGPVSEPVSLGDVVRAYRKEKGSANKAELVLEKQGS