Scaffold Ga0307477_10003377

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10003377
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11908
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F002750	Metagenome / Metatranscriptome	533	Y
F018221	Metagenome / Metatranscriptome	236	Y
F044929	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000337713	F002750	AGG	MLNWLHKFLQTKYVGLLEGEVARLRAENRALTNSLLATAGFPPVDYPEPAKPQPLPRLRKRSWHQIQAWREAGAARDSVSGGNEA
Ga0307477_100033773	F018221	AGGAGG	MGRTRGTQTVRLILPTQRDVLRDVMLTAGKYGAWMTLRELARLTRYGETSISAQLRHLRKAKCGGFVLEKRVRKPEVVSSEEHFVVWEYRLTPRRAFAGKRQESRRRRRQ
Ga0307477_100033774	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALEGPDCASRMVLFRLYYLGLAPYENARHFLGLSEHSWVNWSEEVRRRVGKELLRRGMFPPRKYFSNAA
Ga0307477_100033776	F044929	GGAGG	MKRTLYIASGISVLFTTLAFGHIMVHDTAHIMSHHDGSAVFLIVHTILAVAFAVLSLIGAYFLLTGWRRQSSN