NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10001760

Scaffold Ga0307477_10001760


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10001760 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17578
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001575Metagenome / Metatranscriptome669Y
F033983Metagenome / Metatranscriptome176Y
F036514Metagenome / Metatranscriptome169Y
F042652Metagenome / Metatranscriptome158Y
F051615Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000176011F001575GAGGLKLESWHSSEDKRRWKIVRTDNYTDVPGEIVTADEITGECSLQVGGETKTLSFGPGGIRIVGRGR
Ga0307477_1000176018F036514N/AMTLFDLEELMAYWVEHPPVHILVGAYLGVGKHQRRRIPSAGSGPGAAASSDLQGILAELGPGFGTGDVHAGLPGVVLDFAELKSRAKSKD
Ga0307477_1000176021F033983AGGAGMIVEGSEGSVVFPKDNAESPTASESRTVSIDQLIERWWQDHFPGSALARDTQAWNVAYAAKETLKRLLVQAQDRVLKGSI
Ga0307477_1000176025F042652N/AMSTDDPVVNAMQEINRAFFSAAQRLGVPVSLEGLAKVLVMNLAAAYGEKVAMATLNDIATNATPVARIWGGIAAAADYEPGHA
Ga0307477_1000176026F051615GGAGVSDLIALRAVFPVWDAVGHGIERYPHDLDGVVRVPREVAVHLLHNGGYVVHDRAIAPALDEDIAPMVTR
Ga0307477_100017609F001575GGGGGMKLESWHSSEDKRPHGTSPWAEGSRKIVRTDNYTDVPGEIVTADETTGECSLQVGGETKTLSFGPAGIRIVGRSR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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