Scaffold Ga0307477_10000769

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000769
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31623
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (45.95%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F013395	Metagenome / Metatranscriptome	271	Y
F099022	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000076919	F000703	N/A	MLVREYRESDLAQLRAIHAAQGFDYALPDLSNPLFVTKLVLAKADGVSEQPDMAHGDAIFGAALLRLTAEAYLLLDPRAGTPRQRWQALLALHAAAERDAWKRGLEDVHAWLPPPIAKKFGKRLARLGWLRDNAWTPYCKKLGSPQ
Ga0307477_1000076923	F000624	N/A	MLIHRIGWPAAAGWLTTLIPVAVQFVIFLRWLHRRMRNEEITRAFVRDIATNHLPHIYNALQKIAAEQGITLDETPLVQFVDLNHRRRS
Ga0307477_1000076924	F099022	N/A	MKRSTKVLAGFAGVIALLCFADEYPALRFRGDGHFSGGPVFGYWIRLRPIPFYQAGEHVFHFRGMPNEELSLQLYAEGKSHDNRKELTNLNTEIEATLVDQNRRVVCQASGVVPKESDPCDCKDGKDDCKVWTEAEIEARGQKEWVLMSGGDAAYWHENCLRMRLKPTDSYTLTLRIRNLDPKTPKINLVPTLEGGQPDMP
Ga0307477_100007694	F013395	N/A	MRRAFIGGAALLLCGAIAARSKTESLLFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRQLAPGTVLTCEMLPREHDAIVEGQVSKVSEMVLNCGEHKFVVKTLDFAPQRK
Ga0307477_100007695	F000512	N/A	MIHVLRETHDVPEGVARSLGLAGGINRFREPHYRAVWGWNRLAWIGGKFAERDPATGALLREVVELRREPKYPKVNRWHIEKWLPPETYGSPRAWWAQTVEIEGGRSIPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTVAEHIARAIEWSRHHSRSAGKRAIYDREHRQERAYDAYAYDILDDAVPAFHRQPFVTII
Ga0307477_100007697	F000739	GGAG	MVTRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGVGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0307477_100007699	F000696	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVAQVDTSLQASITDATAPPNQLPTDLLVPVKIWERSNGSSDDFVEMADLSQHGGLPSRAQGLTLSVWEWRADGVYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDEAAGDALEDLIAAAVRREQQSARRRRPFSARSGYTPF