Scaffold Ga0307477_10000745

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000745
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32107
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002368	Metagenome / Metatranscriptome	566	Y
F013287	Metagenome / Metatranscriptome	272	N
F031048	Metagenome	183	Y
F040029	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000074510	F013287	GGA	VKPVRIRDSTFLPVPRDVAELLRVMASKICSVNFKINEKECQLIYSFAKSVPDLKETVSDPRVLLAG
Ga0307477_1000074527	F031048	AGAAG	MESIKHILGLESERQVRFGVLLVSTGIIIITSLLAYNRISYEFPLAVGNTGQSALGPSTSAGVGIVYAMIVVAAILGFGAVLSIFGSLHNVSNRITNAVRESLPTNSNSEPERKDEWEQVSTKTETKATDDEILKALWQSKDKKPTTAE
Ga0307477_1000074528	F040029	GAG	LLGINIFLAVSIISALLDRDLPSILRYLFQGAAGAGIVELLLSQGLTGATRVWAGIVYLAFALSSMVGMNIRLAIVRRGTNIASIFSQMITVPIVMISALFLSSFLENGGELVFSTASIVTIAVAVLVANLSIFGLLREYSRLGPTRSGGLISFPIGPAPVSGDVGPGLKSHRSSEEGEDWEESPTKKEDQ
Ga0307477_1000074529	F002368	N/A	VPIQLSPTRIKGTKYLLIPKDLVQLLEIDDESVLNLTVEDTAKGQRLIYSIRQKSSSNVG