Scaffold Ga0307477

Basic Information
Taxon OID	3300031753 Open in IMG/M
Scaffold ID	Ga0307477_10000486 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43743
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (66.04%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

43743

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (66.04%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y
F079138	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000048621	F006952	GGAGG	VIGPLGTANHEIREAEQRDRARRRARLAEPRRLTDELLGQLEELNLDGVRVVPCSYDPGLAEIRSQLEGWPGLGTPLLERLQSGTRTAELIETVFSIQEVIAPPILPPGAVIFDEPDLV
Ga0307477_1000048622	F004349	AGGA	VQSNTRATLAVTALMLAACGPVQSQAAKLPTASEILNKPDQASVKDAHFTLIAHIVSAGVAFDATGDGVIVIKPAQGSKFTMMTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEETLAQGKAWHVKAKDASGSPFEAWVRESDGYPLKYATTTQGSSFTATFDHFNTGQTVTAPPSSDVQQ
Ga0307477_1000048623	F004003	GGA	MTRALRFATAMAVTALLSGCGGPGAPLGPPKPQDILAKPSHAGSLKDAHFVVTGKFTNNGTTVGLNGDGALVYKSPGAGRFTFQTTVAGQQVSFEDISVNGTDYSLTVPGNGKWTATASTSGLGPSSFTGTSAFKYVGEENLPSGKAWHASANDKDGNPFDGWIRESDGYPLKYVITQQGNTLTLTFDKYNTGAAIAAPPASQVVKG
Ga0307477_1000048624	F004186	AGGTGG	VQPHRPLLILAVAVLAAGCGVPTAAPPPTAKEVLAKPQQSNLTDAHFAVSGKITNAGVTVQLVGDGALVYKPKPEGRFTFTTTVGGQALTIEEISLDGTNYGLTPASNKWTATKSASGIDPNAFSGATNQKYIGEENLPQGKAWHASATDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDHYNTGAIITAPPAAQIQTP
Ga0307477_1000048645	F079138	GGA	MATAGAHRTAVDHGHRIERRKRGRTTRSTVLWLVGITAWGGLFLGLGWLVAAGFYGLLAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307477_10000486

Overview

Ecosystem & Geography

Associated Families

Sequences