Scaffold Ga0307477_10000390

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000390
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50726
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008610	Metagenome / Metatranscriptome	330	Y
F046305	Metagenome / Metatranscriptome	151	N
F066660	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000039019	F008610	GGAG	MGDKPSKVWEPFSKMFKMPEEDWAVLESVYNDYRYRQGDLQRMEFVKRLVAKGVTSYLFQLKSRTPEALVKIAQSSTSLAASR
Ga0307477_100003902	F046305	GGAG	MREAMLTLGTLLLFGGGLMAIAATTPMGAGALITQAALVQMGWSIGIGTIISLLGAALILRNR
Ga0307477_1000039039	F066660	AGG	LQKRLLLLPVIWGAYGIGEVLILTYLFGPILNGLPYVPTDKPIGGSYFPALFFNIAVLFAMIALSLGALGVWTPDLSNPKFKRDIASLVVLLGSGFLVFYSALFLAPLIVSLVYFLATNI