Scaffold Ga0307477_10000294

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000294
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62182
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (73.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002993	Metagenome / Metatranscriptome	514	N
F006839	Metagenome / Metatranscriptome	363	Y
F014244	Metagenome / Metatranscriptome	264	N
F016129	Metagenome / Metatranscriptome	249	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000029420	F006839	N/A	MDTSLDPDMIPYLQEACYYLRKKGLTFPELSKALEITPDQATELFEEYASKIASGAASENEVDRNLWEDIRNDSFGNEKITFARDDGFYHCRRSDLELMESSALMSIFESSRKFLDFDMYKRYLNTKPPVGYDPMALQRQVKRAIELVQDILKQRWVKESGTEASSAPSDHSQTE
Ga0307477_100002945	F016129	GAG	LGVEEEAQPKKSGSRRYVETMLGWPSEESAGGTLYETTLFTSILEYAIVLFFGVWLITEYFYNIYEQQYFGSFDPVFLVIVLMIASGYGFMRLITSIRTQIRPSKKKTRPEDDY
Ga0307477_1000029466	F014244	AGG	VAFGEQTFTLLSEEARARGITIQELLRAVVIPDWFKAKYEPLPRHNPISERRIREEEPVSPYSLTNKLRY
Ga0307477_1000029469	F002993	GAG	MAYGLAEGFRKTAVRLGGKKKKKAVVIATFGNHFSLNDALEKFRKEGLTFDTEKGHIVKIYLDKNTKERAEQVRSIIREHFGYVEPL