NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000264

Scaffold Ga0307477_10000264


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000264 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67575
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (73.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F005385Metagenome / Metatranscriptome402Y
F007968Metagenome / Metatranscriptome341N
F015715Metagenome252N
F027474Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000026410F015715GGCGGMDKQSTIRSIRSSYKIDQVENGWTVSTGDGNMFVFANSQELAEWFCMIVGVPMDGRKPKEDPLESEIRKLVKSYNLVAEDIDKHFLTSTARS
Ga0307477_1000026427F005385AGGVRYKYHYYRWIQTQDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWIDNNYKFEGKPVILVYNAGCFLRGTSLSSKE
Ga0307477_1000026428F007968AGGMRYILTVDFEDDIDIDSFLRFVAYHSKRLKCTSKDVFIRLAHEWEKQLVSTHEPTSPNGSKKEKKKTLKETNE
Ga0307477_1000026436F001093AGGAGMSAETKGRESWTEEVETSGRNTTPSNPLMLSRVFRFSDPQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFTFLGYTLAHELGGTTPKPIRTVVDLQVPDDEFQNFVNTARTATLTDEQLADSVLDVGINWEHFVASNDSLLIPDHPLKITDVLMQEKIDSLDVITEAFVREINLRSIEKQTGTRTRKARD
Ga0307477_1000026451F027474GGAGGVKKGSYEVEVEGPTAERVEKMFDELVKKYMKKIAAP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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