Scaffold Ga0307477_10000247

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000247
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71425
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (75.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F000430	Metagenome / Metatranscriptome	1149	Y
F001311	Metagenome / Metatranscriptome	726	Y
F037403	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000024713	F000430	N/A	MLFQTKKQNTAPPAEPEAGRPAESGEEWLGRNRSSKRRLWERLNPRSRKQIRVMAEALALQQTHAQLPEPQRARLSAAIGELERLAGRIRALLQEVARRTPPGE
Ga0307477_1000024722	F037403	GAG	LLRVRLFQREIDIRFNVAGERSEFFVRGNLLFGALAVAENTLRGFLIVPEIGIGYARFECFQALAVLRAVKDNSERE
Ga0307477_1000024744	F001311	GAG	MATQHDPIMKKITTGGTPRPPASHTERRGSRRCRITQLMRIRPSDPNLDHFEDMRGSASVSRSGVYFQSSEPNYEVGMRLFVTMPYSRDPSSICREYLAEVVRRDVLPTGMFGIGIKILMEMGIQHTYNFGAAGSR
Ga0307477_1000024750	F000169	GGAGG	MVKKNKLTQVAVSIGSAMGRADRKAHQVAKAGVLAKKELQNISKQVDALKRQLQKTTKRLKNALS