Scaffold Ga0307477_10000224

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000224
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77615
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (69.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002500	Metagenome / Metatranscriptome	553	Y
F003037	Metagenome / Metatranscriptome	511	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y
F027149	Metagenome / Metatranscriptome	195	N
F034134	Metagenome	175	Y
F086673	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100002242	F005700	AGAAG	LNLRHNGALTYRTEYFLGILSLIPLLELGAIKGLGWLTTILVVYIGVPLLIWSLLVNHLASFVVRLVCRFRESSGHQYYFERQIGMPGVSRRILRDLRVLFFVFLLSALIVPLVTNVSPGDLASASNVSNAFIYIAIFLLAVPSSIHVLLWVLEDSGLRCHNTTRVTVTVPAQWMSRWLSSAGGIGAFISFALTLGGNLDRALSLALTLFVSLLPSCILAPTLFYRRLEPGIIAKLRQSKAAVKMAQLFSQPIGPGVPIVPSPTAPTLRAQKGPEETRKT
Ga0307477_1000022421	F034134	GGCGG	LITIVGIISTSMGLWIVQADFDAFRGLARRVDGWIFTAPLVLAAIDIYLTLIVLTTSSQIVELNPFVSSAIGIGAAAIVPFMVSYLALSQGLGLFMMRVGSYLFSNSKSRYLPFVLICGAASFGPASNLLLLVDSSAGQFTYLVAGLGSTLISLILFMKINRAEVESRQG
Ga0307477_1000022423	F086673	AGGA	LAVLEQTVQRNEKSANSSTISVPPLFSEAVPSKSREEISELAKHLAHSVVTGYLEHDRGHLDKSVEGFFQVFLNLFTKVSPLRARRAAELYVESLVKQDEIENLPMRSREQIVSDPMWGDLRRIFLELSRTLGIPDSYADETTDFFRYHGVGDSRYMIHCMASENLFMTEAIGNSYWSKILGSLLLLLTECHDKHDSVGLETGIEFATKYYEIILRAKNSIIQKAPMITA
Ga0307477_100002243	F007915	N/A	MAEMAKQPLPSSTLRSYAMIGIVLYAFGVLLNEIGNGLTQLWLVPYADTISALGFVIALYTATLSGVGTRLMVVLGLIYGIGTFYVSEPDATYVASGLKIGSYNTTHDVGLGLIGFTLVLLIALAFYLTRVKRARAVMPRQDPGSAS
Ga0307477_100002244	F003037	AGCAG	MFVEFKCPLCGKDLDDDKTMANFMVCSDQSHGVLRFFTGDGCYFTTNEKVAEELMKKGRRVHIVDPKEFFGTQTMDLE
Ga0307477_1000022445	F027149	GGTGG	VYARLIFLHDLHGTGMSELELLPGNMVECAWCKDSKPVSETTWFMPEPGEKSVRLCGFCYEEARKQVLLIRHVKRRGEFPVEAAS
Ga0307477_1000022474	F002500	N/A	LAITADDITLSVISAIIGLAVTLPVTYLIVDRVVANNEKKKLTPVEKLAKERLRAKLGVGFLTTFLVTLVIDITSAVREKAPIPEEVLSLHIEKLKTAQSDLETLLGVYSNVLDVEIARLTSDVILQIEHLQEDFEYLAELSPRPPTPSHATHIEQLLLKAVHLTKQELVALGTDNQQIRALEDWLTEYTKQSRPAPRKETPIEVRGGHTIS